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Mostrati risultati da 1 a 20 di 36
Titolo Data di pubblicazione Autore(i) File
Accuracy of the pseudopotential approximation in ab initio theoretical spectroscopies 1-gen-2008 Luppi, E; Weissker, H; Bottaro, S; Sottile, F; Veniard, V; Reining, L; Onida, G
Potentials of Mean Force for Protein Structure Prediction Vindicated, Formalized and Generalized 1-gen-2010 Hamelryck, T; Borg, M; Paluszewski, M; Paulsen, J; Frellsen, J; Andreetta, C; Boomsma, W; Bottaro, S; Ferkinghoff-Borg, J
Generative probabilistic models extend the scope of inferential structure determination 1-gen-2011 Olsson, S; Boomsma, W; Frellsen, J; Bottaro, S; Harder, T; Ferkinghoff-Borg, J; Hamelryck, T
An Efficient Null Model for Conformational Fluctuations in Proteins 1-gen-2012 Harder, T; Borg, M; Bottaro, S; Boomsma, W; Olsson, S; Ferkinghoff-Borg, J; Hamelryck, T
Subtle Monte Carlo Updates in Dense Molecular Systems 1-gen-2012 Bottaro, S; Boomsma, W; Johansson K, E.; Andreetta, C; Hamelryck, T; Ferkinghoff-Borg, J
Variational Optimization of an All-Atom Implicit Solvent Force Field To Match Explicit Solvent Simulation Data 1-gen-2013 Bottaro, S; Lindorff-Larsen, Kresten; Best, R B
PHAISTOS: A framework for Markov chain Monte Carlo simulation and inference of protein structure 1-gen-2013 Boomsma, W; Frellsen, J; Harder, T; Bottaro, S; Johansson K, E.; Tian, P; Stovgaard, K; Andreetta, C; Olsson, S; Valentin, J B; Antonov, L D; Christensen, A S; Borg, M; Jensen, J H; Lindorff-Larsen, K; Ferkinghoff-Borg, J; Hamelryck, T
Formulation of probabilistic models of protein structure in atomic detail using the reference ratio method 1-gen-2014 Valentin, B.; Andreetta, C; Boomsma, W; Bottaro, S; Ferkinghoff-Borg, J; Frellsen, J; Mardia, K.; Tian, P; Hamelryck, T
The Role of Nucleobase Interactions in RNA Structure and Dynamics 1-gen-2014 Bottaro, Sandro; Di Palma, Francesco; Bussi, Giovanni
Elastic network models for RNA: a comparative assessment with molecular dynamics and SHAPE experiments 1-gen-2015 Pinamonti, G.; Bottaro, S.; Micheletti, C.; Bussi, G.
Accurate multiple time step in biased molecular simulations 1-gen-2015 Ferrarotti, M. J.; Bottaro, Sandro; Perez Villa, Andrea; Bussi, Giovanni
Kissing loop interaction in adenine riboswitch: insights from umbrella sampling simulations 1-gen-2015 Di Palma, F.; Bottaro, S.; Bussi, G.
Empirical corrections to the Amber RNA force field with Target Metadynamics 1-gen-2016 Gil Ley, Alejandro; Bottaro, Sandro; Bussi, Giovanni
RNA Folding Pathways in Stop Motion 1-gen-2016 Bottaro, Sandro; Gil Ley, Alejandro; Bussi, Giovanni
Computer Folding of RNA Tetraloops: Identification of Key Force Field Deficiencies 1-gen-2016 Kührová, P.; Best, R. B.; Bottaro, Sandro; Bussi, Giovanni; Šponer, J.; Otyepka, M.; Banáš, P.
Free Energy Landscape of GAGA and UUCG RNA Tetraloops 1-gen-2016 Bottaro, Sandro; Banáš, P.; Šponer, J.; Bussi, Giovanni
RNA Conformational Ensembles: Narrowing the GAP between Experiments and Simulations with Metadynamics 1-gen-2016 Gil Ley, Alejandro; Bottaro, Sandro; Bussi, Giovanni
RNA Conformational Fluctuations from Elastic Network Models: A Comparison with Molecular Dynamics and Shape Experiments 1-gen-2016 Pinamonti, Giovanni; Bottaro, Sandro; Micheletti, Cristian; Bussi, Giovanni
Mapping the Universe of RNA Tetraloop Folds 1-gen-2017 Bottaro, S; Lindorff-Larsen, K
Effects and limitations of a nucleobase-driven backmapping procedure for nucleic acids using steered molecular dynamics 1-gen-2018 Poblete, Simón; Bottaro, S; Bussi, Giovanni
Mostrati risultati da 1 a 20 di 36
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