Sfoglia per Autore BOTTARO, SANDRO
Accuracy of the pseudopotential approximation in ab initio theoretical spectroscopies
2008-01-01 Luppi, E; Weissker, H; Bottaro, S; Sottile, F; Veniard, V; Reining, L; Onida, G
Potentials of Mean Force for Protein Structure Prediction Vindicated, Formalized and Generalized
2010-01-01 Hamelryck, T; Borg, M; Paluszewski, M; Paulsen, J; Frellsen, J; Andreetta, C; Boomsma, W; Bottaro, S; Ferkinghoff-Borg, J
Generative probabilistic models extend the scope of inferential structure determination
2011-01-01 Olsson, S; Boomsma, W; Frellsen, J; Bottaro, S; Harder, T; Ferkinghoff-Borg, J; Hamelryck, T
An Efficient Null Model for Conformational Fluctuations in Proteins
2012-01-01 Harder, T; Borg, M; Bottaro, S; Boomsma, W; Olsson, S; Ferkinghoff-Borg, J; Hamelryck, T
Subtle Monte Carlo Updates in Dense Molecular Systems
2012-01-01 Bottaro, S; Boomsma, W; Johansson K, E.; Andreetta, C; Hamelryck, T; Ferkinghoff-Borg, J
PHAISTOS: A framework for Markov chain Monte Carlo simulation and inference of protein structure
2013-01-01 Boomsma, W; Frellsen, J; Harder, T; Bottaro, S; Johansson K, E.; Tian, P; Stovgaard, K; Andreetta, C; Olsson, S; Valentin, J B; Antonov, L D; Christensen, A S; Borg, M; Jensen, J H; Lindorff-Larsen, K; Ferkinghoff-Borg, J; Hamelryck, T
Variational Optimization of an All-Atom Implicit Solvent Force Field To Match Explicit Solvent Simulation Data
2013-01-01 Bottaro, S; Lindorff-Larsen, Kresten; Best, R B
Formulation of probabilistic models of protein structure in atomic detail using the reference ratio method
2014-01-01 Valentin, B.; Andreetta, C; Boomsma, W; Bottaro, S; Ferkinghoff-Borg, J; Frellsen, J; Mardia, K.; Tian, P; Hamelryck, T
The Role of Nucleobase Interactions in RNA Structure and Dynamics
2014-01-01 Bottaro, Sandro; Di Palma, Francesco; Bussi, Giovanni
Accurate multiple time step in biased molecular simulations
2015-01-01 Ferrarotti, M. J.; Bottaro, Sandro; Perez Villa, Andrea; Bussi, Giovanni
Kissing loop interaction in adenine riboswitch: insights from umbrella sampling simulations
2015-01-01 Di Palma, F.; Bottaro, S.; Bussi, G.
Elastic network models for RNA: a comparative assessment with molecular dynamics and SHAPE experiments
2015-01-01 Pinamonti, G.; Bottaro, S.; Micheletti, C.; Bussi, G.
RNA Conformational Fluctuations from Elastic Network Models: A Comparison with Molecular Dynamics and Shape Experiments
2016-01-01 Pinamonti, Giovanni; Bottaro, Sandro; Micheletti, Cristian; Bussi, Giovanni
Free Energy Landscape of GAGA and UUCG RNA Tetraloops
2016-01-01 Bottaro, Sandro; Banáš, P.; Šponer, J.; Bussi, Giovanni
RNA Folding Pathways in Stop Motion
2016-01-01 Bottaro, Sandro; Gil Ley, Alejandro; Bussi, Giovanni
RNA Conformational Ensembles: Narrowing the GAP between Experiments and Simulations with Metadynamics
2016-01-01 Gil Ley, Alejandro; Bottaro, Sandro; Bussi, Giovanni
Empirical corrections to the Amber RNA force field with Target Metadynamics
2016-01-01 Gil Ley, Alejandro; Bottaro, Sandro; Bussi, Giovanni
Computer Folding of RNA Tetraloops: Identification of Key Force Field Deficiencies
2016-01-01 Kührová, P.; Best, R. B.; Bottaro, Sandro; Bussi, Giovanni; Šponer, J.; Otyepka, M.; Banáš, P.
Mapping the Universe of RNA Tetraloop Folds
2017-01-01 Bottaro, S; Lindorff-Larsen, K
Biophysical experiments and biomolecular simulations: A perfect match?
2018-01-01 Bottaro, S; Lindorff-Larsen, K
Titolo | Data di pubblicazione | Autore(i) | File |
---|---|---|---|
Accuracy of the pseudopotential approximation in ab initio theoretical spectroscopies | 1-gen-2008 | Luppi, E; Weissker, H; Bottaro, S; Sottile, F; Veniard, V; Reining, L; Onida, G | |
Potentials of Mean Force for Protein Structure Prediction Vindicated, Formalized and Generalized | 1-gen-2010 | Hamelryck, T; Borg, M; Paluszewski, M; Paulsen, J; Frellsen, J; Andreetta, C; Boomsma, W; Bottaro, S; Ferkinghoff-Borg, J | |
Generative probabilistic models extend the scope of inferential structure determination | 1-gen-2011 | Olsson, S; Boomsma, W; Frellsen, J; Bottaro, S; Harder, T; Ferkinghoff-Borg, J; Hamelryck, T | |
An Efficient Null Model for Conformational Fluctuations in Proteins | 1-gen-2012 | Harder, T; Borg, M; Bottaro, S; Boomsma, W; Olsson, S; Ferkinghoff-Borg, J; Hamelryck, T | |
Subtle Monte Carlo Updates in Dense Molecular Systems | 1-gen-2012 | Bottaro, S; Boomsma, W; Johansson K, E.; Andreetta, C; Hamelryck, T; Ferkinghoff-Borg, J | |
PHAISTOS: A framework for Markov chain Monte Carlo simulation and inference of protein structure | 1-gen-2013 | Boomsma, W; Frellsen, J; Harder, T; Bottaro, S; Johansson K, E.; Tian, P; Stovgaard, K; Andreetta, C; Olsson, S; Valentin, J B; Antonov, L D; Christensen, A S; Borg, M; Jensen, J H; Lindorff-Larsen, K; Ferkinghoff-Borg, J; Hamelryck, T | |
Variational Optimization of an All-Atom Implicit Solvent Force Field To Match Explicit Solvent Simulation Data | 1-gen-2013 | Bottaro, S; Lindorff-Larsen, Kresten; Best, R B | |
Formulation of probabilistic models of protein structure in atomic detail using the reference ratio method | 1-gen-2014 | Valentin, B.; Andreetta, C; Boomsma, W; Bottaro, S; Ferkinghoff-Borg, J; Frellsen, J; Mardia, K.; Tian, P; Hamelryck, T | |
The Role of Nucleobase Interactions in RNA Structure and Dynamics | 1-gen-2014 | Bottaro, Sandro; Di Palma, Francesco; Bussi, Giovanni | |
Accurate multiple time step in biased molecular simulations | 1-gen-2015 | Ferrarotti, M. J.; Bottaro, Sandro; Perez Villa, Andrea; Bussi, Giovanni | |
Kissing loop interaction in adenine riboswitch: insights from umbrella sampling simulations | 1-gen-2015 | Di Palma, F.; Bottaro, S.; Bussi, G. | |
Elastic network models for RNA: a comparative assessment with molecular dynamics and SHAPE experiments | 1-gen-2015 | Pinamonti, G.; Bottaro, S.; Micheletti, C.; Bussi, G. | |
RNA Conformational Fluctuations from Elastic Network Models: A Comparison with Molecular Dynamics and Shape Experiments | 1-gen-2016 | Pinamonti, Giovanni; Bottaro, Sandro; Micheletti, Cristian; Bussi, Giovanni | |
Free Energy Landscape of GAGA and UUCG RNA Tetraloops | 1-gen-2016 | Bottaro, Sandro; Banáš, P.; Šponer, J.; Bussi, Giovanni | |
RNA Folding Pathways in Stop Motion | 1-gen-2016 | Bottaro, Sandro; Gil Ley, Alejandro; Bussi, Giovanni | |
RNA Conformational Ensembles: Narrowing the GAP between Experiments and Simulations with Metadynamics | 1-gen-2016 | Gil Ley, Alejandro; Bottaro, Sandro; Bussi, Giovanni | |
Empirical corrections to the Amber RNA force field with Target Metadynamics | 1-gen-2016 | Gil Ley, Alejandro; Bottaro, Sandro; Bussi, Giovanni | |
Computer Folding of RNA Tetraloops: Identification of Key Force Field Deficiencies | 1-gen-2016 | Kührová, P.; Best, R. B.; Bottaro, Sandro; Bussi, Giovanni; Šponer, J.; Otyepka, M.; Banáš, P. | |
Mapping the Universe of RNA Tetraloop Folds | 1-gen-2017 | Bottaro, S; Lindorff-Larsen, K | |
Biophysical experiments and biomolecular simulations: A perfect match? | 1-gen-2018 | Bottaro, S; Lindorff-Larsen, K |
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